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Healthcare Kaggle Competition $30k prize money
Hi...for those that are interested in healthcare (or want a chance to win $30k), this new Kaggle competition looks like a fun one: https://www.kaggle.com/c/siim-acr-pneumothorax-segmentation Scott
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Healthcare data warehouse
Dear RM friends, In 2016 we published a paper in PLOSOne to demonstrate the potential of RM for the integration, use, analysis, etc of a large medical database (MIMIC-III) in a dedicated Hadoop cluster with Hive server using Radoop. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0145791 The paper was…
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Summarizing XMI output
Hello all, I am currently using NLP to analyze some papers but relatively new to it. I used the clinical pipeline in Apache cTakes to indicate all medical procedures in 100 papers with an input and output directory. This worked. However, I can now only see the indications via a Visual Debugger (CVD) for each paper…
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ICD 9/10 classification
Has anyone created any pipelines that can accurately return ICD 9 /10 clinical codes from free text, any insights around this topic are much appreciated !!
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Bio-Engineering: Principal Component Analysis (PCA) applied to RNA for better Cancer Screening Tests
Optimization of a Multiplex RNA-based Expression Assay Using Breast Cancer Archival Material (RapidMiner at 8 min mark) https://www.jove.com/video/57148/optimization-multiplex-rna-based-expression-assay-using-breast-cancer
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Datasearch Google
Hi, Interested in how valuable you all find this "new" service from Google? https://toolbox.google.com/datasetsearch https://toolbox.google.com/datasetsearch Cheers Sven
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Gut feeling doctors more predictive than machine learning, what is missing?
Dear RM friends, I would love to see a discussion, feedback, views or comments on these findings. How could these "gut feeling" be captured and translated into ML? http://news.mit.edu/2018/doctors-rely-gut-feelings-decision-making-0720 We are interested as we noticed similar findings in the preparation of this chapter:…
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Be honest and IBM Watson....
Dear RM friends, Interesting feedback https://spectrum.ieee.org/the-human-os/robotics/artificial-intelligence/layoffs-at-watson-health-reveal-ibms-problem-with-ai Cheers Sven
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Chapter on predictive models in critically ill patients using ensemble methods
Hi, RM's, We recently published a chapter using and mentioning RapidMiner entitled: Early prediction of patient mortality based on routine laboratory tests and predictive models in critically ill patients. The chapter is attached to this post. Cheers Sven
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Special Issue PlosOne AI
Dear friends, PLOSONE is scheduling a special issue covering AI in health. Who is interested to co-author a paper presenting the potential of #Automodel and #noblackboxes in health and biomedical research. I think this is a right moment to present the technology to the biomed and pharma community. Please feedback.…
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AutoModel and Medical Data
Dear RapidMiner Friends, Congrats for implementing the AutoModel tool which I consider a critical step for more acceptance in a #noblackboxes community as the one I am working in. This is a huge step forward! Try to understand how a physician is taking a decision based on the signs and symptoms a patient is presenting…
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Medical RM presentation (Italian)
Hi, For the italian speaking medical community, a presentation was posted today on RM and the use for medical data. https://www.facebook.com/DrMoaiedAlNattah/videos/1071977542944107/ Cheers
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De-identification of medical text
Hi, Planning a scientific paper on the use of RM in the medical field. Therefore I would like to implement a recent github project (Python) in a RM process. https://github.com/vmenger/deduce/blob/master/setup.py The RM community member who is able to integrate the py code in a RM process where data consist of a column with…
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Where to find a solid database to start digging....
Dear RM friends, The Biomed and Pharma industry are considered the slow adopters for analytics implementation but as I see initiatives grow every day, I think the time is right to get your focus on this industry. The Pharma industry is taking the lead with "Precision Medicine" as joined effort to combine the best medical…
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Using Coordinate Data in predictive models
I have data that includes coordinates X,Y,Z + condition and a label of interest (outcome). How do I build a predictive model using these coordinates as a factor?