Bug in Optimize Parameter operator?
Fred12
New Altair Community Member
hi,
I was using k-nn inside optimize parameter (inside X-Validation) operator... and I was using euklidean and camberra distance for opt parameter settings...
but I noticed, that when using name "k-NN (2)" inside opt. parameter, it does not change the numerical_measure type... when I use a standard name "k-NN", it does change the parameters during running... seems to be a minor bug caused by the naming of the parameter as I experienced it?
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0
Best Answers
-
ok here is a quick sample process where I used both k-NN:
in the one log the 2 distances show up, but not in the other:
<?xml version="1.0" encoding="UTF-8"?><process version="7.4.000">
<context>
<input/>
<output/>
<macros/>
</context>
<operator activated="true" class="process" compatibility="7.4.000" expanded="true" name="Process">
<process expanded="true">
<operator activated="true" class="retrieve" compatibility="7.4.000" expanded="true" height="68" name="Retrieve Iris" width="90" x="45" y="85">
<parameter key="repository_entry" value="//Samples/data/Iris"/>
</operator>
<operator activated="false" class="x_validation" compatibility="7.4.000" expanded="true" height="124" name="Validation" width="90" x="447" y="34">
<parameter key="number_of_validations" value="4"/>
<parameter key="sampling_type" value="stratified sampling"/>
<process expanded="true">
<operator activated="true" class="support_vector_machine_libsvm" compatibility="7.4.000" expanded="true" height="82" name="SVM" width="90" x="112" y="34">
<parameter key="gamma" value="0.007170375144641631"/>
<parameter key="C" value="227500.0"/>
<list key="class_weights"/>
</operator>
<connect from_port="training" to_op="SVM" to_port="training set"/>
<connect from_op="SVM" from_port="model" to_port="model"/>
<portSpacing port="source_training" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="7.4.000" expanded="true" height="82" name="Apply Model" width="90" x="112" y="34">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="7.4.000" expanded="true" height="82" name="Performance" width="90" x="313" y="34">
<parameter key="kappa" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<parameter key="correlation" value="true"/>
<parameter key="squared_correlation" value="true"/>
<parameter key="margin" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model" to_port="model"/>
<connect from_port="test set" to_op="Apply Model" to_port="unlabelled data"/>
<connect from_op="Apply Model" from_port="labelled data" to_op="Performance" to_port="labelled data"/>
<connect from_op="Performance" from_port="performance" to_port="averagable 1"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_averagable 1" spacing="0"/>
<portSpacing port="sink_averagable 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="retrieve" compatibility="7.4.000" expanded="true" height="68" name="Retrieve Iris (2)" width="90" x="112" y="340">
<parameter key="repository_entry" value="//Samples/data/Iris"/>
</operator>
<operator activated="true" class="optimize_parameters_grid" compatibility="7.4.000" expanded="true" height="103" name="Optimize Parameters (Grid)" width="90" x="246" y="187">
<list key="parameters">
<parameter key="k-NN.k" value="[1.0;20;6;linear]"/>
<parameter key="k-NN.numerical_measure" value="EuclideanDistance,CamberraDistance"/>
</list>
<process expanded="true">
<operator activated="true" class="concurrency:cross_validation" compatibility="7.4.000" expanded="true" height="145" name="Cross Validation (2)" width="90" x="179" y="34">
<process expanded="true">
<operator activated="true" class="k_nn" compatibility="7.4.000" expanded="true" height="82" name="k-NN" width="90" x="179" y="85">
<parameter key="k" value="20"/>
<parameter key="numerical_measure" value="CamberraDistance"/>
</operator>
<connect from_port="training set" to_op="k-NN" to_port="training set"/>
<connect from_op="k-NN" from_port="model" to_port="model"/>
<portSpacing port="source_training set" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="7.4.000" expanded="true" height="82" name="Apply Model (3)" width="90" x="112" y="34">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="7.4.000" expanded="true" height="82" name="Performance (3)" width="90" x="313" y="34">
<parameter key="kappa" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<parameter key="correlation" value="true"/>
<parameter key="squared_correlation" value="true"/>
<parameter key="margin" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model (3)" to_port="model"/>
<connect from_port="test set" to_op="Apply Model (3)" to_port="unlabelled data"/>
<connect from_op="Apply Model (3)" from_port="labelled data" to_op="Performance (3)" to_port="labelled data"/>
<connect from_op="Performance (3)" from_port="performance" to_port="performance 1"/>
<connect from_op="Performance (3)" from_port="example set" to_port="test set results"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_test set results" spacing="0"/>
<portSpacing port="sink_performance 1" spacing="0"/>
<portSpacing port="sink_performance 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="log" compatibility="7.4.000" expanded="true" height="82" name="Log (3)" width="90" x="380" y="85">
<list key="log">
<parameter key="k" value="operator.k-NN.parameter.k"/>
<parameter key="nummeasure" value="operator.k-NN.parameter.numerical_measure"/>
</list>
</operator>
<connect from_port="input 1" to_op="Cross Validation (2)" to_port="example set"/>
<connect from_op="Cross Validation (2)" from_port="performance 1" to_op="Log (3)" to_port="through 1"/>
<connect from_op="Log (3)" from_port="through 1" to_port="performance"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="source_input 2" spacing="0"/>
<portSpacing port="sink_performance" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
</process>
</operator>
<operator activated="true" class="optimize_parameters_grid" compatibility="7.4.000" expanded="true" height="103" name="Optimize Parameters (2)" width="90" x="246" y="340">
<list key="parameters">
<parameter key="k-NN (2).k" value="[1.0;20;6;linear]"/>
<parameter key="k-NN (2).numerical_measure" value="EuclideanDistance,CamberraDistance"/>
</list>
<process expanded="true">
<operator activated="true" class="concurrency:cross_validation" compatibility="7.4.000" expanded="true" height="145" name="Cross Validation (3)" width="90" x="179" y="34">
<process expanded="true">
<operator activated="true" class="k_nn" compatibility="7.4.000" expanded="true" height="82" name="k-NN (2)" width="90" x="179" y="85">
<parameter key="k" value="20"/>
<parameter key="numerical_measure" value="CamberraDistance"/>
</operator>
<connect from_port="training set" to_op="k-NN (2)" to_port="training set"/>
<connect from_op="k-NN (2)" from_port="model" to_port="model"/>
<portSpacing port="source_training set" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="7.4.000" expanded="true" height="82" name="Apply Model (4)" width="90" x="112" y="34">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="7.4.000" expanded="true" height="82" name="Performance (4)" width="90" x="313" y="34">
<parameter key="kappa" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<parameter key="correlation" value="true"/>
<parameter key="squared_correlation" value="true"/>
<parameter key="margin" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model (4)" to_port="model"/>
<connect from_port="test set" to_op="Apply Model (4)" to_port="unlabelled data"/>
<connect from_op="Apply Model (4)" from_port="labelled data" to_op="Performance (4)" to_port="labelled data"/>
<connect from_op="Performance (4)" from_port="performance" to_port="performance 1"/>
<connect from_op="Performance (4)" from_port="example set" to_port="test set results"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_test set results" spacing="0"/>
<portSpacing port="sink_performance 1" spacing="0"/>
<portSpacing port="sink_performance 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="log" compatibility="7.4.000" expanded="true" height="82" name="Log (4)" width="90" x="447" y="85">
<list key="log">
<parameter key="k" value="operator.k-NN.parameter.k"/>
<parameter key="nummeasure" value="operator.k-NN.parameter.numerical_measure"/>
</list>
</operator>
<connect from_port="input 1" to_op="Cross Validation (3)" to_port="example set"/>
<connect from_op="Cross Validation (3)" from_port="performance 1" to_op="Log (4)" to_port="through 1"/>
<connect from_op="Log (4)" from_port="through 1" to_port="performance"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="source_input 2" spacing="0"/>
<portSpacing port="sink_performance" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
</process>
</operator>
<connect from_op="Retrieve Iris" from_port="output" to_op="Optimize Parameters (Grid)" to_port="input 1"/>
<connect from_op="Retrieve Iris (2)" from_port="output" to_op="Optimize Parameters (2)" to_port="input 1"/>
<connect from_op="Optimize Parameters (Grid)" from_port="performance" to_port="result 1"/>
<connect from_op="Optimize Parameters (2)" from_port="performance" to_port="result 2"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
<portSpacing port="sink_result 2" spacing="0"/>
<portSpacing port="sink_result 3" spacing="0"/>
</process>
</operator>
</process>1 -
Thanks @Fred12 for the process. I've tested it with a lower compatability too and the problem is the same. I have pinged the developers.
0
Answers
-
Hi,
Thanks for pointing this out. Can you do us a quick favor and post the XML of a process using a data set from the Sample repository? This would allow our engineers to replicate and chase this bug.
Thanks,
Ingo
0 -
ok here is a quick sample process where I used both k-NN:
in the one log the 2 distances show up, but not in the other:
<?xml version="1.0" encoding="UTF-8"?><process version="7.4.000">
<context>
<input/>
<output/>
<macros/>
</context>
<operator activated="true" class="process" compatibility="7.4.000" expanded="true" name="Process">
<process expanded="true">
<operator activated="true" class="retrieve" compatibility="7.4.000" expanded="true" height="68" name="Retrieve Iris" width="90" x="45" y="85">
<parameter key="repository_entry" value="//Samples/data/Iris"/>
</operator>
<operator activated="false" class="x_validation" compatibility="7.4.000" expanded="true" height="124" name="Validation" width="90" x="447" y="34">
<parameter key="number_of_validations" value="4"/>
<parameter key="sampling_type" value="stratified sampling"/>
<process expanded="true">
<operator activated="true" class="support_vector_machine_libsvm" compatibility="7.4.000" expanded="true" height="82" name="SVM" width="90" x="112" y="34">
<parameter key="gamma" value="0.007170375144641631"/>
<parameter key="C" value="227500.0"/>
<list key="class_weights"/>
</operator>
<connect from_port="training" to_op="SVM" to_port="training set"/>
<connect from_op="SVM" from_port="model" to_port="model"/>
<portSpacing port="source_training" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="7.4.000" expanded="true" height="82" name="Apply Model" width="90" x="112" y="34">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="7.4.000" expanded="true" height="82" name="Performance" width="90" x="313" y="34">
<parameter key="kappa" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<parameter key="correlation" value="true"/>
<parameter key="squared_correlation" value="true"/>
<parameter key="margin" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model" to_port="model"/>
<connect from_port="test set" to_op="Apply Model" to_port="unlabelled data"/>
<connect from_op="Apply Model" from_port="labelled data" to_op="Performance" to_port="labelled data"/>
<connect from_op="Performance" from_port="performance" to_port="averagable 1"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_averagable 1" spacing="0"/>
<portSpacing port="sink_averagable 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="retrieve" compatibility="7.4.000" expanded="true" height="68" name="Retrieve Iris (2)" width="90" x="112" y="340">
<parameter key="repository_entry" value="//Samples/data/Iris"/>
</operator>
<operator activated="true" class="optimize_parameters_grid" compatibility="7.4.000" expanded="true" height="103" name="Optimize Parameters (Grid)" width="90" x="246" y="187">
<list key="parameters">
<parameter key="k-NN.k" value="[1.0;20;6;linear]"/>
<parameter key="k-NN.numerical_measure" value="EuclideanDistance,CamberraDistance"/>
</list>
<process expanded="true">
<operator activated="true" class="concurrency:cross_validation" compatibility="7.4.000" expanded="true" height="145" name="Cross Validation (2)" width="90" x="179" y="34">
<process expanded="true">
<operator activated="true" class="k_nn" compatibility="7.4.000" expanded="true" height="82" name="k-NN" width="90" x="179" y="85">
<parameter key="k" value="20"/>
<parameter key="numerical_measure" value="CamberraDistance"/>
</operator>
<connect from_port="training set" to_op="k-NN" to_port="training set"/>
<connect from_op="k-NN" from_port="model" to_port="model"/>
<portSpacing port="source_training set" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="7.4.000" expanded="true" height="82" name="Apply Model (3)" width="90" x="112" y="34">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="7.4.000" expanded="true" height="82" name="Performance (3)" width="90" x="313" y="34">
<parameter key="kappa" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<parameter key="correlation" value="true"/>
<parameter key="squared_correlation" value="true"/>
<parameter key="margin" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model (3)" to_port="model"/>
<connect from_port="test set" to_op="Apply Model (3)" to_port="unlabelled data"/>
<connect from_op="Apply Model (3)" from_port="labelled data" to_op="Performance (3)" to_port="labelled data"/>
<connect from_op="Performance (3)" from_port="performance" to_port="performance 1"/>
<connect from_op="Performance (3)" from_port="example set" to_port="test set results"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_test set results" spacing="0"/>
<portSpacing port="sink_performance 1" spacing="0"/>
<portSpacing port="sink_performance 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="log" compatibility="7.4.000" expanded="true" height="82" name="Log (3)" width="90" x="380" y="85">
<list key="log">
<parameter key="k" value="operator.k-NN.parameter.k"/>
<parameter key="nummeasure" value="operator.k-NN.parameter.numerical_measure"/>
</list>
</operator>
<connect from_port="input 1" to_op="Cross Validation (2)" to_port="example set"/>
<connect from_op="Cross Validation (2)" from_port="performance 1" to_op="Log (3)" to_port="through 1"/>
<connect from_op="Log (3)" from_port="through 1" to_port="performance"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="source_input 2" spacing="0"/>
<portSpacing port="sink_performance" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
</process>
</operator>
<operator activated="true" class="optimize_parameters_grid" compatibility="7.4.000" expanded="true" height="103" name="Optimize Parameters (2)" width="90" x="246" y="340">
<list key="parameters">
<parameter key="k-NN (2).k" value="[1.0;20;6;linear]"/>
<parameter key="k-NN (2).numerical_measure" value="EuclideanDistance,CamberraDistance"/>
</list>
<process expanded="true">
<operator activated="true" class="concurrency:cross_validation" compatibility="7.4.000" expanded="true" height="145" name="Cross Validation (3)" width="90" x="179" y="34">
<process expanded="true">
<operator activated="true" class="k_nn" compatibility="7.4.000" expanded="true" height="82" name="k-NN (2)" width="90" x="179" y="85">
<parameter key="k" value="20"/>
<parameter key="numerical_measure" value="CamberraDistance"/>
</operator>
<connect from_port="training set" to_op="k-NN (2)" to_port="training set"/>
<connect from_op="k-NN (2)" from_port="model" to_port="model"/>
<portSpacing port="source_training set" spacing="0"/>
<portSpacing port="sink_model" spacing="0"/>
<portSpacing port="sink_through 1" spacing="0"/>
</process>
<process expanded="true">
<operator activated="true" class="apply_model" compatibility="7.4.000" expanded="true" height="82" name="Apply Model (4)" width="90" x="112" y="34">
<list key="application_parameters"/>
</operator>
<operator activated="true" class="performance_classification" compatibility="7.4.000" expanded="true" height="82" name="Performance (4)" width="90" x="313" y="34">
<parameter key="kappa" value="true"/>
<parameter key="weighted_mean_recall" value="true"/>
<parameter key="weighted_mean_precision" value="true"/>
<parameter key="correlation" value="true"/>
<parameter key="squared_correlation" value="true"/>
<parameter key="margin" value="true"/>
<list key="class_weights"/>
</operator>
<connect from_port="model" to_op="Apply Model (4)" to_port="model"/>
<connect from_port="test set" to_op="Apply Model (4)" to_port="unlabelled data"/>
<connect from_op="Apply Model (4)" from_port="labelled data" to_op="Performance (4)" to_port="labelled data"/>
<connect from_op="Performance (4)" from_port="performance" to_port="performance 1"/>
<connect from_op="Performance (4)" from_port="example set" to_port="test set results"/>
<portSpacing port="source_model" spacing="0"/>
<portSpacing port="source_test set" spacing="0"/>
<portSpacing port="source_through 1" spacing="0"/>
<portSpacing port="sink_test set results" spacing="0"/>
<portSpacing port="sink_performance 1" spacing="0"/>
<portSpacing port="sink_performance 2" spacing="0"/>
</process>
</operator>
<operator activated="true" class="log" compatibility="7.4.000" expanded="true" height="82" name="Log (4)" width="90" x="447" y="85">
<list key="log">
<parameter key="k" value="operator.k-NN.parameter.k"/>
<parameter key="nummeasure" value="operator.k-NN.parameter.numerical_measure"/>
</list>
</operator>
<connect from_port="input 1" to_op="Cross Validation (3)" to_port="example set"/>
<connect from_op="Cross Validation (3)" from_port="performance 1" to_op="Log (4)" to_port="through 1"/>
<connect from_op="Log (4)" from_port="through 1" to_port="performance"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="source_input 2" spacing="0"/>
<portSpacing port="sink_performance" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
</process>
</operator>
<connect from_op="Retrieve Iris" from_port="output" to_op="Optimize Parameters (Grid)" to_port="input 1"/>
<connect from_op="Retrieve Iris (2)" from_port="output" to_op="Optimize Parameters (2)" to_port="input 1"/>
<connect from_op="Optimize Parameters (Grid)" from_port="performance" to_port="result 1"/>
<connect from_op="Optimize Parameters (2)" from_port="performance" to_port="result 2"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
<portSpacing port="sink_result 2" spacing="0"/>
<portSpacing port="sink_result 3" spacing="0"/>
</process>
</operator>
</process>1 -
Thanks @Fred12 for the process. I've tested it with a lower compatability too and the problem is the same. I have pinged the developers.
0
