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RM 9.1 feedback : Let's talk of the new Automatic Feature Engineering (FS)

Hi all,

First I wish to all readers a Merry Christmas.
Now sit comfortably because this is going to be a long post...!

1/ (Little) error of inconsistency between the chart and the table of the Feature Sets in Auto-Model :

To reproduce this error :
- Click on Auto Model
- Select the Titanic dataset
- Enable the Decision Tree model (disable all the other models) and of course, enable AFS (with accurate option)
- Run the model

It seems that it is just a coding error which causes a "shift" between the chart and the table of feature sets.

2 / Feedback RM 9.1 : My suggestions about AFE implemented in Auto-Model

2.1 Plot the optimal Trade-Offs around the optimum :
"... a small diagram is better than a long speech..."
If I good understood, the selected feature set minimize the "distance " between the selected point and the origin of the chart (0,0).
So to visualize that the selected feature sets is effectivly the optimal feature set, it can be a good idea to continue to plot
the optimal Trade Offs . If I'm wrong, thank you to correct me.

2.2 Precise the definition of "fitness".
If I good understand, the fitness (displayed as IOObjectCollection at the exit of the AFE operator) is assimilated to the error : It can be a good idea
to precise the definition of this notion. Once again, If I'm wrong thank you to correct me.

2.3 Set apply pruning and/or prepruning to FALSE for DT model (and similar models - RF...) when AFS and/or Optimize Parameters are enabled :
I will try to describe my reasoning : From my point of view , when we choose willingly to search the optimal feature set (via AFE) and/or the best combinaison of parameters (in case of DT, the best k), we expect the best possible model by sacrificing some time (I understood that RM users are not very patient...). So it is to obtain a model effectivly using the found optimal feature set and/or effectivly with the optimal combinaison of parameters.
Once again take the example of Titanic with DT (Automatically Optimize enabled) and AFE enabled.
After execution, RM concludes that :
- Feature set = 4
- k (max depth) = 4
with apply pruning and/or prepruning to FALSE, we obtain a model with effectivly 4 Features and a k = 4 which has an accuracy of 96.53% .
By default, in Auto-Model, apply pruning and/or prepruning are set to TRUE, so in practice we obtain a simple model with k = 1 and using one feature :

and with a (relativ) bad accuracy of 77,87 % so in fine , by default, we lose all interest in having realized a feature selection and / or a parametric optimization.
So my conclusion is to set for DT (and assimilated models) "apply pruning" and/or "apply prepruning" to "FALSE" when the user choose to set "Automatic Feature Selection" to "enabled".

What do you think about all these items ?

Thanks you for your patience and your listening and good luck to the RM staff for the next release of RapidMiner...

Regards,

Lionel

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Accepted answers

sgenzer

hello @lionelderkrikor - wow what an in-depth post! I'm going to leave the analysis of this to @IngoRM as this is all Auto Model. All I'm going to do is tag this as "Bug Report" and "Feature Request".

Happy holidays to you as well!

Scott

IngoRM

Hi @lionelderkrikor,

Fantastic feedback - thanks for taking the time and writing this down. Let me comment on some of the items already now (but rest assured that we will look into all of the items in depth as well).

1) "It seems that it is just a coding error which causes a "shift" between the chart and the table of feature sets."

Yes, indeed. No clue how that happened - we have tested this 1,000s of times and this never happened. It indeed does not happen if you deselect the "Life Boat" column which we actually do as part of the test script. Weird - we will look into this of course and will fix this.

2.1) "Plot the optimal Trade-Offs around the optimum"

I get where you are coming from. This does not make a lot of sense though since there no other optimal trade-offs to be plotted (this is the whole concept of the Pareto front that no point is actually better than the others). There are not other points "north" of the top left point (since adding more complexity does no longer need to better models) and going with points to the top right are no longer Pareto-optimal and are therefore removed during the optimization run.

"If I good understood, the selected feature set minimize the "distance " between the selected point and the origin of the chart (0,0)."

Yes and no. The optimization indeed tries to move the whole front to the origin, but it is not like the point on the front with minimal distance is the best and will be selected at the end. In fact, there is no "best" point in the front (see above) - all points are equal in the sense that they represent the trade-off between the two competing criteria. See here for some basic information about multi-objective optimization and Pareto fronts: https://en.wikipedia.org/wiki/Pareto_efficiency (in case it helps, otherwise pls ignore...)

2.2) "Precise the definition of fitness"

Yes, we use "fitness" here since you could go with different types of error measurement (think unsupervised learning). Now thinking a bit more about this, the choice of words here is poor in any case since typically the fitness is something you want to maximize but we actually want to minimize it here. So we will probably "rebrand" this to "error" for classification / regression tasks and "DB-Index" for unsupervised tasks (not supported yet but will come in 2019).

2.3) "Set apply pruning and/or prepruning to FALSE for DT model (and similar models - RF...) when AFS and/or Optimize Parameters are enabled"

Good thinking here. We will check this for the next release.

Thanks again for the fantastic feedback, very helpful indeed!

Best,
Ingo

All comments

sgenzer

Happy holidays to you as well!

Scott

IngoRM

Hi @lionelderkrikor,

Fantastic feedback - thanks for taking the time and writing this down. Let me comment on some of the items already now (but rest assured that we will look into all of the items in depth as well).

1) "It seems that it is just a coding error which causes a "shift" between the chart and the table of feature sets."

2.1) "Plot the optimal Trade-Offs around the optimum"

"If I good understood, the selected feature set minimize the "distance " between the selected point and the origin of the chart (0,0)."

2.2) "Precise the definition of fitness"

2.3) "Set apply pruning and/or prepruning to FALSE for DT model (and similar models - RF...) when AFS and/or Optimize Parameters are enabled"

Good thinking here. We will check this for the next release.

Thanks again for the fantastic feedback, very helpful indeed!

Best,
Ingo

lionelderkrikor

@IngoRM,

Thank you for taking the time to respond.
By the way, your webinar about "Feature Engineering" convinced me that this step is decisive in the methodology of a data-science project.

Regards,

Lionel

IngoRM

Thanks. Yes, it can be very important. However, I really want to underline what I also mentioned in the webinar, that often it is not necessarily about an improvement in model accuracy but really about the reduction in complexity while maintaining the accuracy of the model. This has been a bit different in the old days (read: 10+ years ago), but today whenever people reported that they had massive accuracy improvements by doing feature selection they typically did not correctly validate but looked at the "training" error of the feature selection outcome only.

Things are different for feature generation / extraction of course, since here you sometimes can get to a breakthrough representation allowing the ML algorithm the underlying patterns which have been hidden before. But that unfortunately does not happen for every data science project as well. But it is always worth a try if time allows...

Anyway, many thanks again for your questions, suggestions, and the bug report. This is much appreciated.

Best,
Ingo

IngoRM

Hi again,

We have looked into this an there was indeed a problem with the sorting of individuals which happened in certain cases only. We have applied a fix and the problem does no longer occur in our tests. But since this is a bit of a nasty problem which is difficult to spot, I would like to ask our community members to give it a try themselves in the upcoming beta release (will come soon).

Thanks again for pointing this out & best,
Ingo