Precision Recall Curves
Just like with Cross Validation and using performance, we get ROC curves with TPR, FPR, how can we get the Precision,Recall curves? I dont want the average precision and recall, but curves for each fold. Can anyone suggest, please
Thanks
uday
Thanks
uday
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Hi Johan,
sorry for that delay, but we are very busy right now with many projects. Unfortunately we cannot spend that much time for supporting community members as we want to.
Currently there's now integrated way of building such curves. There are three possibilities: You could implement it yourself and possibly contributing the code to the public, giving something back to the community. Or you could ask us for a quote for implementing it for you. The last possibility is to build a process that will create such a plot as outcome.
If it's completely analog to the AUROC, you will have to first sort after some of the confidences and then always increase a counter if it was a correct prediction. You could derive a dataset from this. But this indeed needs some macro generation, Set Data Operators and Loop Examples. Will be a quite sophisticated process...
Greetings,
Sebastian
sorry for that delay, but we are very busy right now with many projects. Unfortunately we cannot spend that much time for supporting community members as we want to.
Currently there's now integrated way of building such curves. There are three possibilities: You could implement it yourself and possibly contributing the code to the public, giving something back to the community. Or you could ask us for a quote for implementing it for you. The last possibility is to build a process that will create such a plot as outcome.
If it's completely analog to the AUROC, you will have to first sort after some of the confidences and then always increase a counter if it was a correct prediction. You could derive a dataset from this. But this indeed needs some macro generation, Set Data Operators and Loop Examples. Will be a quite sophisticated process...
Greetings,
Sebastian
Thanks for your reply!
I found a way to do it, here it is for others
1. Modified the LibLinear Java code in method predict to pass the label and print the decision value for the label
3. Use http://mark.goadrich.com/programs/AUC/ to get both precision-recall curves or accuracy curves from the above predictions
Sebastian
I would love to contribute this in package in summer
Thanks
Johan
I found a way to do it, here it is for others
1. Modified the LibLinear Java code in method predict to pass the label and print the decision value for the label
public static int predict(Model model, FeatureNode[] x, int label) {
double[] dec_values = new double[model.nr_class];
int prediction = predictValues(model, x, dec_values);
try{
predictionOutputWriter.write(dec_values[0]*model.label[0] + "\t" + label +"\n");
}catch(Exception e){e.printStackTrace();}
return prediction;
}
2. Have predictionOutputWriter initialized to write to data file3. Use http://mark.goadrich.com/programs/AUC/ to get both precision-recall curves or accuracy curves from the above predictions
Sebastian
I would love to contribute this in package in summer
Thanks
Johan
Hi,
contributing this would be great. Probably one can make it easier if introducing this code into one operator that generates an appropriate ResultObject like the ROC operator does.
Greetings,
Sebastian
contributing this would be great. Probably one can make it easier if introducing this code into one operator that generates an appropriate ResultObject like the ROC operator does.
Greetings,
Sebastian
Hi 5 years later; same question. Has there been any progress on this yet? Any ways of getting a PR curve out of rapidminer?
Hello,
Has there ben any progress on an operator to get the PRC out of RM?
Thanks
Narayan
Has there ben any progress on an operator to get the PRC out of RM?
Thanks
Narayan
You need to install the Operator Toolbox (free extension) and there is an operator in that called Performance (AUPRC)
Thanks again
Johan