"Problem with R-script results"
ighyboo
New Altair Community Member
Hi everyone,
I used the R extension before and always managed to get the data out using "outdata <-as.data.frame(Results)"
I'm currently working on a script that download twitter followers using the twitter API, everything work fine and I managed to create the results data-frame but Rapidminer doesn't like it and spit out this error:
"In order to import an R Data Frame as example set the data frame must provide attribute names"
I'm confused because when I check my result variable with colnames(outdata), the column names are assigned as you can see here:
colnames(Results)
[1] "id_str" "name" "screen_name"
[4] "url" "profile_image_url" "description"
[7] "location" "followers_count" "friends_count"
[10] "statuses_count" "created_at"
Anyone else had this problem before?
Here's the process and the script:
I used the R extension before and always managed to get the data out using "outdata <-as.data.frame(Results)"
I'm currently working on a script that download twitter followers using the twitter API, everything work fine and I managed to create the results data-frame but Rapidminer doesn't like it and spit out this error:
"In order to import an R Data Frame as example set the data frame must provide attribute names"
I'm confused because when I check my result variable with colnames(outdata), the column names are assigned as you can see here:
colnames(Results)
[1] "id_str" "name" "screen_name"
[4] "url" "profile_image_url" "description"
[7] "location" "followers_count" "friends_count"
[10] "statuses_count" "created_at"
Anyone else had this problem before?
Here's the process and the script:
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<process version="5.3.015">
<context>
<input/>
<output/>
<macros/>
</context>
<operator activated="true" class="process" compatibility="5.3.015" expanded="true" name="Process">
<process expanded="true">
<operator activated="true" class="generate_data_user_specification" compatibility="5.3.015" expanded="true" height="60" name="Generate Data by User Specification" width="90" x="45" y="30">
<list key="attribute_values">
<parameter key="target" value=""WRADARltd""/>
</list>
<list key="set_additional_roles"/>
</operator>
<operator activated="true" class="r:execute_script_r" compatibility="5.3.000" expanded="true" height="76" name="Execute Script (R)" width="90" x="179" y="30">
<parameter key="script" value="#Install libraries install.packages("httr"); install.packages("rjson"); install.packages("data.table"); library(httr); library(rjson); library(data.table); #Declare API keys and inputs consumer_key = "UansBjFHOm8fpkB4jx5mSiDTu"; consumer_secret = "dKTbQ0QKCqHaejnLyHOW0PHuOzpn5PIhjVmOkGMzcyLuaFrA7p"; target = indata$target; #Auth secret <- RCurl::base64(paste(consumer_key, consumer_secret, sep = ":")); req <- POST("https://api.twitter.com/oauth2/token", config(httpheader = c( "Authorization" = paste("Basic", secret), "Content-Type" = "application/x-www-form-urlencoded;charset=UTF-8" )), body = "grant_type=client_credentials", encode = "multipart" ); #Extract the access token token <- paste("Bearer", content(req)$access_token) #Request Followers count url <- paste("https://api.twitter.com/1.1/users/lookup.json?screen_name=",target,sep=""); req <- GET(url, config(httpheader = c("Authorization" = token))); json <- content(req, as = "text"); tmp <- fromJSON(json); num_followers <- tmp[[1]]$followers_count; #If more than 5000 followers split ID request otherwise retrieve all in one request if (num_followers<5000) { 	#Request <5000 IDs 	url <- paste("https://api.twitter.com/1.1/followers/ids.json?screen_name=",target,sep=""); 	req <- GET(url, config(httpheader = c("Authorization" = token))); 	json <- content(req, as = "text"); 	IDs <- fromJSON(json); 	IDlist <- data.frame(IDs$ids); 	 	} else { 	 	#Request batches of IDs 	batches <- ceiling(num_followers/5000); 	batch_size <- ceiling(num_followers/batches); 	curs <- "-1"; 	IDlist <- data.frame(); 	for (i in 1:batches) { 		url <- paste("https://api.twitter.com/1.1/followers/ids.json?cursor=",curs,"&screen_name=",target,"&count=",batch_size,sep=""); 		req <- GET(url, config(httpheader = c("Authorization" = token))); 		json <- content(req, as = "text"); 		IDs <- fromJSON(json); 		tmp <- data.frame(IDs$ids); 		IDlist <- rbind(IDlist, tmp); 		curs <- IDs$next_cursor_str; 		Sys.sleep(60); 		}; 	}; #Loop through IDs in batches to retrieve full profiles batches <- ceiling(num_followers/100); batch_size <- ceiling(num_followers/batches); BatchIDcounter <- 0; FollowersList <- data.frame(); for (i in 1:batches) { 	start <- BatchIDcounter; 	end <- BatchIDcounter+batch_size; 	if (end>length(IDlist[,1])) { 		end <-length(IDlist[,1]); 		batch_size <- (end-start); 	}; 	BatchIDs <- paste(IDlist[start:end,1],collapse=","); 	url <- paste("https://api.twitter.com/1.1/users/lookup.json?include_entities=false&user_id=",BatchIDs,sep=""); 	req <- GET(url, config(httpheader = c("Authorization" = token))); 	json <- content(req, as = "text"); 	profiles <- fromJSON(json); 	for (j in 1:batch_size) { 		tmp <- data.table(id_str="",name="",screen_name="",url="",profile_image_url="",description="",location="",followers_count="",friends_count="",statuses_count="",created_at=""); 		if (length(profiles[]$id_str)==0) {tmp$id_str=""} else{tmp$id_str=head(profiles[]$id_str[1])}; 		if (length(profiles[]$name)==0) {tmp$name=""} else{tmp$name=head(profiles[]$name[1])}; 		if (length(profiles[]$screen_name)==0) {tmp$screen_name=""} else{tmp$screen_name=head(profiles[]$screen_name[1])}; 		if (length(profiles[]$url)==0) {tmp$url=""} else{tmp$url=head(profiles[]$url[1])}; 		if (length(profiles[]$profile_image_url)==0) {tmp$profile_image_url=""} else{tmp$profile_image_url=head(profiles[]$profile_image_url[1])}; 		if (length(profiles[]$description)==0) {tmp$description=""} else{tmp$description=head(profiles[]$description[1])}; 		if (length(profiles[]$location)==0) {tmp$location=""} else{tmp$location=head(profiles[]$location[1])}; 		if (length(profiles[]$url)==0) {tmp$url=""} else{tmp$url=head(profiles[]$url[1])}; 		if (length(profiles[]$followers_count)==0) {tmp$followers_count=""} else{tmp$followers_count=head(profiles[]$followers_count[1])}; 		if (length(profiles[]$friends_count)==0) {tmp$friends_count=""} else{tmp$friends_count=head(profiles[]$friends_count[1])}; 		if (length(profiles[]$statuses_count)==0) {tmp$statuses_count=""} else{tmp$statuses_count=head(profiles[]$statuses_count[1])}; 		if (length(profiles[]$created_at)==0) {tmp$created_at=""} else{tmp$created_at=head(profiles[]$created_at[1])}; 		FollowersList <- rbind(FollowersList, tmp); 	}; 	BatchIDcounter <- end; 	Sys.sleep(5); }; #Output outdata <- as.data.frame(FollowersList); "/>
<enumeration key="inputs">
<parameter key="name_of_variable" value="indata"/>
</enumeration>
<list key="results">
<parameter key="outdata" value="Data Table"/>
</list>
</operator>
<operator activated="true" breakpoints="before" class="write_excel" compatibility="5.3.015" expanded="true" height="76" name="Write Excel" width="90" x="447" y="30">
<parameter key="excel_file" value="C:\Documents and Settings\menghii1\Desktop\first.xlsx"/>
<parameter key="file_format" value="xlsx"/>
</operator>
<connect from_op="Generate Data by User Specification" from_port="output" to_op="Execute Script (R)" to_port="input 1"/>
<connect from_op="Execute Script (R)" from_port="output 1" to_op="Write Excel" to_port="input"/>
<connect from_op="Write Excel" from_port="through" to_port="result 1"/>
<portSpacing port="source_input 1" spacing="0"/>
<portSpacing port="sink_result 1" spacing="0"/>
<portSpacing port="sink_result 2" spacing="0"/>
</process>
</operator>
</process>
0
Answers
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P.S.
Here the log details:SEVERE: Process failed: In order to import an R Data Frame as example set the data frame must provide attribute names.
com.rapidminer.operator.UserError: In order to import an R Data Frame as example set the data frame must provide attribute names.
at com.rapidminer.tools.r.translation.ExampleSetTranslator.getAttribute(ExampleSetTranslator.java:174)
at com.rapidminer.tools.r.translation.ExampleSetTranslator.importObject(ExampleSetTranslator.java:105)
at com.rapidminer.tools.r.translation.ExampleSetTranslator.importObject(ExampleSetTranslator.java:64)
at com.rapidminer.operator.r.RScriptOperator.doWork(RScriptOperator.java:217)
at com.rapidminer.operator.Operator.execute(Operator.java:866)
at com.rapidminer.operator.execution.SimpleUnitExecutor.execute(SimpleUnitExecutor.java:51)
at com.rapidminer.operator.ExecutionUnit.execute(ExecutionUnit.java:711)
at com.rapidminer.operator.OperatorChain.doWork(OperatorChain.java:375)
at com.rapidminer.operator.Operator.execute(Operator.java:866)
at com.rapidminer.Process.run(Process.java:949)
at com.rapidminer.Process.run(Process.java:873)
at com.rapidminer.Process.run(Process.java:832)
at com.rapidminer.Process.run(Process.java:827)
at com.rapidminer.Process.run(Process.java:817)
at com.rapidminer.gui.ProcessThread.run(ProcessThread.java:63)0 -
Has anyone looked into this?
I see that the same problem appeared in another post http://rapid-i.com/rapidforum/index.php/topic,7128.msg24720.html#msg24720.
"tennenrishin" reported that this issue only happened when NA values were present however I tested that and in my case it happens even if all the values are present.
I even tried to explicitly declare every column of the DataFrame when creating it but no luck...
This was actually one of the main reasons why I stopped using RM and moved to do most of my work directly in R... But that's a real pity as there are many things that I like about RM.
Any possible solution?0 -
Hello
I had the same problem. What I figured is when you put data from R to Rapidminer you must assure that all character data is a factor. Example
If you have a input variable name as "input" and you want to create a column "newcolumn" with the value "newvalue" may you type
input$newcolumn<-"newvalue"
But this expression will give you a error.
However, if you try
input$newcolumn<-as.factor("newvalue" )
Rapidminer will recognize the new attribute
0 -
As a general tip, there is the new R scripting extension, which offers a much smoother integration of R for RapidMiner:
https://marketplace.rapidminer.com/UpdateServer/faces/product_details.xhtml?productId=rmx_r_scripting0 -
I installed the new extender and dont see the perspective load on restarting Rapidminer..it does state when I tried to install the extention , that the extention is already installed , any ideas ?
Thanks0
