[SOLVED] Clustering SSE measure calculation

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Hi,

does anyone know how to calculate the SSE value of a clustering in rapidminer?

nav

I answer myself and share some piece of knowledge with you...

To calculate the SSE measure I wrote a small script in the Execute Script Operator. The script is this;

/**
*	Author: N@v
*	Version: 0.0.1
*	Date: 11/01/2012
*
*	Description:
*	This script permits to calculate the SSE measure of a given clustering coming out from a centroid-based clustering algorithm.
*
*	Input:
*	input[0]: the example set of the clustering
*	input[1]: the example set of the centroids
*	input[2]: the cluster model of the cluster operator
*
*	Output:
*	The SSE value of the clustering will be displayed in log consolle.
**/

import com.rapidminer.operator.clustering.ClusterModel;
import com.rapidminer.operator.clustering.Cluster;

ExampleSet clusteringSet = input[0];
ExampleSet centroids = input[1];
ClusterModel clustering = input[2];

Double sum = new Double(0);
centroids.remapIds();
TreeMap<Integer,Example> centroidMap = new TreeMap<Integer, Example>();
for (Example centroid : centroids) {
	String key = centroid.getValueAsString(centroid.getAttributes().get("cluster"));
	key = key.substring(8);	
	Cluster cluster = clustering.getCluster(Integer.parseInt(key));

	if (cluster.getNumberOfExamples() == 0) {
		continue;
	}
	else {
		Collection<Object> idsList = cluster.getExampleIds();
		clusteringSet.remapIds();	
		for (Object id : idsList) {
			Example example = clusteringSet.getExampleFromId((Double) id);
			distance = new Double(calculateEuclideanDistance(centroid, example));
			sum += distance*distance;
		}
	}
}
operator.logNote("SSE: " + sum);


Double calculateEuclideanDistance(Example a, Example b)
{
		Attribute[] atts = a.getAttributes().createRegularAttributeArray();
		Double sum = new Double(0);
		Double dist = new Double(0);
		for (Attribute att : atts){
			String attStr = att.getName();
			Double aValue = new Double(a.getValue(a.getAttributes().get(attStr)));
			Double bValue = new Double(b.getValue(b.getAttributes().get(attStr)));
			Double difference = new Double(aValue - bValue);
			sum += Math.pow(difference,2);
		}
		dist = Math.sqrt(sum);

		return dist;
}

The script is very simple and at now it works only for centroid-based algorithm but I plan to adapt it to general case... it needs only to calculate the centroids by hand.

If you have any comments or suggestions let me know.

Asmaa_Ali

Hello 
I used the script but i got this error 
"cannot cast object'cluster 0:..items cluster 1:..items Total number of items with class'com.rapidminer.operator.clustering.ClusterModel' to class 'com.rapidminer.example.ExampeSet'

thanks